Martin Raden, nee Mann
Martin Raden, nee Mann
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Cited by
Cited by
Bioconda: sustainable and comprehensive software distribution for the life sciences.
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475, 2018
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
M Mann, PR Wright, R Backofen
Nucleic Acids Research 45 (W1), W435–W439, 2017
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
PR Wright, J Georg, M Mann, DA Sorescu, AS Richter, S Lott, R Kleinkauf, ...
Nucleic acids research 42 (W1), W119-W123, 2014
Comparative genomics boosts target prediction for bacterial small RNAs
PR Wright, AS Richter, K Papenfort, M Mann, J Vogel, WR Hess, ...
Proceedings of the National Academy of Sciences 110 (37), E3487-E3496, 2013
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ...
Nucleic acids research 46 (W1), 2018
CPSP-tools–Exact and complete algorithms for high-throughput 3D lattice protein studies
M Mann, S Will, R Backofen
BMC bioinformatics 9, 1-8, 2008
antaRNA: ant colony-based RNA sequence design
R Kleinkauf, M Mann, R Backofen
Bioinformatics 31 (19), 3114-3121, 2015
MoDPepInt: an interactive web server for prediction of modular domain–peptide interactions
K Kundu, M Mann, F Costa, R Backofen
Bioinformatics 30 (18), 2668-2669, 2014
GLASSgo–automated and reliable detection of sRNA homologs from a single input sequence
SC Lott, RA Schäfer, M Mann, R Backofen, WR Hess, B Voß, J Georg
Frontiers in genetics, 124, 2018
CPSP-web-tools: a server for 3D lattice protein studies
M Mann, C Smith, M Rabbath, M Edwards, S Will, R Backofen
Bioinformatics 25 (5), 676-677, 2009
CARNA—alignment of RNA structure ensembles
DA Sorescu, M Möhl, M Mann, R Backofen, S Will
Nucleic acids research 40 (W1), W49-W53, 2012
antaRNA–Multi-objective inverse folding of pseudoknot RNA using ant-colony optimization
R Kleinkauf, T Houwaart, R Backofen, M Mann
BMC bioinformatics 16, 1-7, 2015
Atom mapping with constraint programming
M Mann, F Nahar, N Schnorr, R Backofen, PF Stadler, C Flamm
Algorithms for Molecular Biology 9, 1-12, 2014
Producing high-accuracy lattice models from protein atomic coordinates including side chains
M Mann, R Saunders, C Smith, R Backofen, CM Deane
Advances in bioinformatics 2012, 2012
Protein folding simulation by two-stage optimization
AD Ullah, L Kapsokalivas, M Mann, K Steinhöfel
International Symposium on Intelligence Computation and Applications, 138-145, 2009
The graph grammar library-a generic framework for chemical graph rewrite systems
M Mann, H Ekker, C Flamm
Theory and Practice of Model Transformations: 6th International Conference …, 2013
CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems
OS Alkhnbashi, A Mitrofanov, R Bonidia, M Raden, VD Tran, ...
Nucleic Acids Research 49 (W1), W125-W130, 2021
Evolution of metabolic networks: a computational frame-work
C Flamm, A Ullrich, H Ekker, M Mann, D Högerl, M Rohrschneider, ...
Journal of Systems Chemistry 1, 1-14, 2010
MicroRNA-100-5p and microRNA-298-5p released from apoptotic cortical neurons are endogenous Toll-like receptor 7/8 ligands that contribute to neurodegeneration
T Wallach, ZJ Mossmann, M Szczepek, M Wetzel, R Machado, M Raden, ...
Molecular Neurodegeneration 16 (1), 80, 2021
MutaRNA: analysis and visualization of mutation-induced changes in RNA structure.
M Miladi, M Raden, S Diederichs, R Backofen
Nucleic Acids Research 37 (12), 1-5, 2020
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