Pierre Barbera

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Alexandros StamatakisHeidelberg Institute for Theoretical Studies and Karlsruhe Institute of TechnologyVerified email at h-its.org
Lucas CzechCarnegie Institution for Science at Stanford UniversityVerified email at carnegiescience.edu
Alexey M. KozlovHeidelberg Institute for Theoretical StudiesVerified email at h-its.org
Benoît MorelHeidelberg Institute of Theoretical StudiesVerified email at h-its.org
Tomas FlouriUniversity College LondonVerified email at ucl.ac.uk
Diego DarribaUniversity of A Coruña, CITIC, Computer Architecture GroupVerified email at udc.es
Pavlos PavlidisFoundation of Research and Technology - Hellas (ICS)Verified email at ics.forth.gr
Rayan ChikhiInstitut Pasteur & CNRSVerified email at ens-cachan.org
Artem Babaian, Ph.D.University of TorontoVerified email at utoronto.ca
Mahwash JamyUppsala UniversityVerified email at ebc.uu.se
Fabien BurkiUppsala UniversityVerified email at ebc.uu.se
David BassCefas, The Natural History Museum, Oxford UniversityVerified email at cefas.co.uk
Rachel FosterDocent, Stockholm UniversityVerified email at su.se

Pierre Barbera

Freelance Bioinformatics Technology Engineer

Verified email at h-its.org

high performance computing metagenomics phylogenetics taxonomic identification phylogenetic placement


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EPA-ng: massively parallel evolutionary placement of genetic sequences P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ... Systematic biology 68 (2), 365-369, 2019	295	2019
Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data L Czech, P Barbera, A Stamatakis Bioinformatics 36 (10), 3263-3265, 2020	119	2020
Phylogenetic analysis of SARS-CoV-2 data is difficult B Morel, P Barbera, L Czech, B Bettisworth, L Hübner, S Lutteropp, ... Molecular biology and evolution 38 (5), 1777-1791, 2021	107	2021
Petabase-scale sequence alignment catalyses viral discovery RC Edgar, J Taylor, V Lin, T Altman, P Barbera, D Meleshko, D Lohr, ... Nature 602 (7895), 142-147, 2022	102	2022
Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity M Jamy, R Foster, P Barbera, L Czech, A Kozlov, A Stamatakis, ... Molecular Ecology Resources 20 (2), 429-443, 2020	67	2020
Retrofitting smartphones to be used as particulate matter dosimeters M Budde, P Barbera, R El Masri, T Riedel, M Beigl Proceedings of the 2013 International Symposium on Wearable Computers, 139-140, 2013	32	2013
Methods for automatic reference trees and multilevel phylogenetic placement L Czech, P Barbera, A Stamatakis Bioinformatics 35 (7), 1151-1158, 2019	30	2019
SCRAPP: A tool to assess the diversity of microbial samples from phylogenetic placements P Barbera, L Czech, S Lutteropp, A Stamatakis Molecular ecology resources 21 (1), 340-349, 2021	5	2021
Metagenomic Analysis using Phylogenetic Placement--A Review of the First Decade L Czech, A Stamatakis, M Dunthorn, P Barbera arXiv preprint arXiv:2202.03534, 2022	4	2022
High-Performance approaches for Phylogenetic Placement, and its application to species and diversity quantification P Barbera		2021
Efficient Memory Management in Likelihood-based Phylogenetic Placement P Barbera, A Stamatakis IEEE International Parallel and Distributed Processing Symposium Workshops …, 2021		2021
Two Independent and Highly Efficient Open Source TKF91 Implementations N Baudis, P Barbera, S Graf, S Lutteropp, D Opitz, T Flouri, A Stamatakis bioRxiv, 033191, 2015		2015
Scalable Computational Molecular Evolution Software & Data Analyses A Stamatakis, A Kozlov, P Barbera High Performance Computing, 231, 0

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