Pierre Barbera

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Alexandros StamatakisHeidelberg Institute for Theoretical Studies and Karlsruhe Institute of TechnologyVerified email at h-its.org
Lucas CzechCarnegie Institution for ScienceVerified email at carnegiescience.edu
Alexey M. KozlovHeidelberg Institute for Theoretical StudiesVerified email at h-its.org
Benoît MorelHeidelberg Institute of Theoretical StudiesVerified email at h-its.org
Tomas FlouriUniversity College LondonVerified email at ucl.ac.uk
Diego DarribaUniversity of A Coruña, CITIC, Computer Architecture GroupVerified email at udc.es
Pavlos PavlidisFoundation of Research and Technology - Hellas (ICS)Verified email at ics.forth.gr
Mahwash JamyUppsala UniversityVerified email at ebc.uu.se
Fabien BurkiUppsala UniversityVerified email at ebc.uu.se
David BassCefas, The Natural History Museum, Oxford UniversityVerified email at cefas.co.uk
Rayan ChikhiInstitut Pasteur & CNRSVerified email at ens-cachan.org
Artem Babaian, Ph.D.University of CambridgeVerified email at cam.ac.uk
Rachel FosterDocent, Stockholm UniversityVerified email at su.se

Pierre Barbera

Heidelberg Institute of Theoretical Studies

Verified email at h-its.org

high performance computing metagenomics phylogenetics taxonomic identification phylogenetic placement


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
EPA-ng: massively parallel evolutionary placement of genetic sequences P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ... Systematic biology 68 (2), 365-369, 2019	181	2019
Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data L Czech, P Barbera, A Stamatakis Bioinformatics 36 (10), 3263-3265, 2020	60	2020
Phylogenetic analysis of SARS-CoV-2 data is difficult B Morel, P Barbera, L Czech, B Bettisworth, L Hübner, S Lutteropp, ... Molecular biology and evolution 38 (5), 1777-1791, 2021	49	2021
Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity M Jamy, R Foster, P Barbera, L Czech, A Kozlov, A Stamatakis, ... Molecular ecology resources 20 (2), 429-443, 2020	36	2020
Retrofitting smartphones to be used as particulate matter dosimeters M Budde, P Barbera, R El Masri, T Riedel, M Beigl Proceedings of the 2013 International Symposium on Wearable Computers, 139-140, 2013	31	2013
Methods for automatic reference trees and multilevel phylogenetic placement L Czech, P Barbera, A Stamatakis Bioinformatics 35 (7), 1151-1158, 2019	26	2019
Petabase-scale sequence alignment catalyses viral discovery RC Edgar, J Taylor, V Lin, T Altman, P Barbera, D Meleshko, D Lohr, ... bioRxiv, 2020.08. 07.241729, 2021	13	2021
SCRAPP: A tool to assess the diversity of microbial samples from phylogenetic placements P Barbera, L Czech, S Lutteropp, A Stamatakis Molecular ecology resources 21 (1), 340-349, 2021	3	2021
Efficient Memory Management in Likelihood-based Phylogenetic Placement P Barbera, A Stamatakis IEEE International Parallel and Distributed Processing Symposium Workshops …, 2021		2021
Two Independent and Highly Efficient Open Source TKF91 Implementations N Baudis, P Barbera, S Graf, S Lutteropp, D Opitz, T Flouri, A Stamatakis bioRxiv, 033191, 2015		2015
Scalable Computational Molecular Evolution Software & Data Analyses A Stamatakis, A Kozlov, P Barbera High Performance Computing, 231, 0

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