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Santeri Puranen
Santeri Puranen
Senior Researcher & Software Developer
Verified email at utu.fi
Title
Cited by
Cited by
Year
The collagen receptor subfamily of the integrins
DJ White, S Puranen, MS Johnson, J Heino
The international journal of biochemistry & cell biology 36 (8), 1405-1410, 2004
2352004
ShaEP: molecular overlay based on shape and electrostatic potential
MJ Vainio, JS Puranen, MS Johnson
Journal of chemical information and modeling 49 (2), 492-502, 2009
2212009
α11β1 integrin recognizes the GFOGER sequence in interstitial collagens
WM Zhang, J Käpylä, JS Puranen, CG Knight, CF Tiger, ...
Journal of Biological Chemistry 278 (9), 7270-7277, 2003
2082003
Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium
S Arredondo-Alonso, J Top, A McNally, S Puranen, M Pesonen, J Pensar, ...
MBio 11 (1), 10.1128/mbio. 03284-19, 2020
114*2020
Accurate conformation‐dependent molecular electrostatic potentials for high‐throughput in silico drug discovery
JS Puranen, MJ Vainio, MS Johnson
Journal of computational chemistry 31 (8), 1722-1732, 2010
1142010
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
MJ Skwark, NJ Croucher, S Puranen, C Chewapreecha, M Pesonen, ...
PLoS genetics 13 (2), e1006508, 2017
1092017
Molecular mechanism of α2β1 integrin interaction with human echovirus 1
J Jokinen, DJ White, M Salmela, M Huhtala, J Käpylä, K Sipilä, ...
The EMBO journal 29 (1), 196-208, 2010
762010
Emergence of ceftazidime-avibactam-resistant Klebsiella pneumoniae during treatment, Finland, December 2018
K Räisänen, I Koivula, H Ilmavirta, S Puranen, T Kallonen, O Lyytikäinen, ...
Eurosurveillance 24 (19), 1900256, 2019
572019
Jararhagin-derived RKKH peptides induce structural changes in α1I domain of human integrin α1β1
Y Nymalm, JS Puranen, TKM Nyholm, J Käpylä, H Kidron, ...
Journal of Biological Chemistry 279 (9), 7962-7970, 2004
552004
Effects of conformational activation of integrin α1I and α2I domains on selective recognition of laminin and collagen subtypes
M Tulla, M Lahti, JS Puranen, AM Brandt, J Käpylä, A Domogatskaya, ...
Experimental cell research 314 (8), 1734-1743, 2008
462008
Genome-wide epistasis and co-selection study using mutual information
J Pensar, S Puranen, B Arnold, N MacAlasdair, J Kuronen, G Tonkin-Hill, ...
Nucleic acids research 47 (18), e112-e112, 2019
402019
Two synergistic activation mechanisms of α2β1 integrin-mediated collagen binding
WL Connors, J Jokinen, DJ White, JS Puranen, P Kankaanpaöaö, P Upla, ...
Journal of biological chemistry 282 (19), 14675-14683, 2007
392007
SuperDCA for genome-wide epistasis analysis
S Puranen, M Pesonen, J Pensar, YY Xu, JA Lees, SD Bentley, ...
Microbial Genomics 4 (6), doi: 10.1099/mgen.0.000184, 2018
272018
K-Pax2: Bayesian identification of cluster-defining amino acid positions in large sequence datasets
A Pessia, Y Grad, S Cobey, JS Puranen, J Corander
Microbial genomics 1 (1), e000025, 2015
152015
Molecular docking guided comparative GFA, G/PLS, SVM and ANN models of structurally diverse dual binding site acetylcholinesterase inhibitors
S Gupta, A Fallarero, MJ Vainio, P Saravanan, J Santeri Puranen, ...
Molecular informatics 30 (8), 689-706, 2011
132011
Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, Enterococcus faecium
J Top, S Arredondo-Alonso, AC Schürch, S Puranen, M Pesonen, ...
Microbial genomics 6 (12), e000488, 2020
112020
Inverse finite-size scaling for high-dimensional significance analysis
Y Xu, S Puranen, J Corander, Y Kabashima
Physical Review E 97 (6), 062112, 2018
112018
Probabilistic prediction of contacts in protein-ligand complexes
R Hakulinen, S Puranen, JV Lehtonen, MS Johnson, J Corander
Plos one 7 (11), e49216, 2012
52012
High-dimensional structure learning of binary pairwise Markov networks: a comparative numerical study
J Pensar, Y Xu, S Puranen, M Pesonen, Y Kabashima, J Corander
Computational statistics & data analysis 141, 62-76, 2020
42020
Cross-species evolutionary rewiring in the enteric bacterium Campylobacter 2
AJ Taylor, G Méric, K Yahara, B Pascoe, L Mageiros, KA Bayliss, ...
microbiology 42, 43, 2021
3*2021
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