Stefan Janssen
Stefan Janssen
Bestätigte E-Mail-Adresse bei computational.bio.uni-giessen.de - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
2602*2019
Gut microbiota regulate motor deficits and neuroinflammation in a model of Parkinson’s disease
TR Sampson, JW Debelius, T Thron, S Janssen, GG Shastri, ZE Ilhan, ...
Cell 167 (6), 1469-1480. e12, 2016
14632016
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
9602017
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
3802017
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 2018
244*2018
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
1672018
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
JP Schlüter, J Reinkensmeier, S Daschkey, E Evguenieva-Hackenberg, ...
BMC genomics 11 (1), 245, 2010
1252010
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...
Nature 579 (7800), 567-574, 2020
952020
The RNA shapes studio
S Janssen, R Giegerich
Bioinformatics 31 (3), 423-425, 2015
872015
Phylogenetic placement of exact amplicon sequences improves associations with clinical information
S Janssen, D McDonald, A Gonzalez, JA Navas-Molina, L Jiang, ZZ Xu, ...
Msystems 3 (3), 2018
83*2018
A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice
TR Sampson, C Challis, N Jain, A Moiseyenko, MS Ladinsky, GG Shastri, ...
Elife 9, e53111, 2020
542020
KatharoSeq enables high-throughput microbiome analysis from low-biomass samples
JJ Minich, Q Zhu, S Janssen, R Hendrickson, A Amir, R Vetter, J Hyde, ...
MSystems 3 (3), 2018
53*2018
Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month
N Iszatt, S Janssen, V Lenters, C Dahl, H Stigum, R Knight, S Mandal, ...
Microbiome 7 (1), 1-14, 2019
482019
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ...
Nature communications 10 (1), 1-14, 2019
452019
Shape based indexing for faster search of RNA family databases
S Janssen, J Reeder, R Giegerich
BMC bioinformatics 9 (1), 131, 2008
422008
The impact of skin care products on skin chemistry and microbiome dynamics
A Bouslimani, R da Silva, T Kosciolek, S Janssen, C Callewaert, A Amir, ...
BMC biology 17 (1), 1-20, 2019
372019
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
S Janssen, C Schudoma, G Steger, R Giegerich
BMC bioinformatics 12 (1), 429, 2011
312011
Assessing taxonomic metagenome profilers with OPAL
F Meyer, A Bremges, P Belmann, S Janssen, AC McHardy, D Koslicki
Genome biology 20 (1), 1-10, 2019
292019
Bellman’s GAP—a language and compiler for dynamic programming in sequence analysis
G Sauthoff, M Möhl, S Janssen, R Giegerich
Bioinformatics 29 (5), 551-560, 2013
272013
Creating a 3D microbial and chemical snapshot of a human habitat
CA Kapono, JT Morton, A Bouslimani, AV Melnik, K Orlinsky, TL Knaan, ...
Scientific reports 8 (1), 1-12, 2018
252018
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