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Benjamin Callahan
Benjamin Callahan
Associate Professor, NC State University
Verified email at ncsu.edu - Homepage
Title
Cited by
Cited by
Year
DADA2: High-resolution sample inference from Illumina amplicon data
BJ Callahan, PJ McMurdie, MJ Rosen, AW Han, AJA Johnson, ...
Nature methods 13 (7), 581-583, 2016
110052016
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
6799*2019
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
BJ Callahan, PJ McMurdie, SP Holmes
The ISME journal 11 (12), 2639-2643, 2017
18532017
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
NM Davis, DM Proctor, SP Holmes, DA Relman, BJ Callahan
Microbiome 6 (1), 1-14, 2018
10242018
Temporal and spatial variation of the human microbiota during pregnancy
DB DiGiulio, BJ Callahan, PJ McMurdie, EK Costello, DJ Lyell, ...
Proceedings of the National Academy of Sciences 112 (35), 11060-11065, 2015
8452015
Bioconductor workflow for microbiome data analysis: from raw reads to community analyses
BJ Callahan, K Sankaran, JA Fukuyama, PJ McMurdie, SP Holmes
F1000Research 5, 2016
5752016
Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women
BJ Callahan, DB DiGiulio, DSA Goltsman, CL Sun, EK Costello, ...
Proceedings of the National Academy of Sciences 114 (37), 9966-9971, 2017
2392017
High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution
BJ Callahan, J Wong, C Heiner, S Oh, CM Theriot, AS Gulati, SK McGill, ...
Nucleic acids research 47 (18), e103-e103, 2019
2132019
Consistent and correctable bias in metagenomic sequencing experiments
MR McLaren, AD Willis, BJ Callahan
Elife 8, e46923, 2019
2002019
Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea
EM Bik, EK Costello, AD Switzer, BJ Callahan, SP Holmes, RS Wells, ...
Nature communications 7 (1), 1-13, 2016
1672016
Heterozygote advantage as a natural consequence of adaptation in diploids
D Sellis, BJ Callahan, DA Petrov, PW Messer
Proceedings of the National Academy of Sciences 108 (51), 20666-20671, 2011
1662011
Denoising PCR-amplified metagenome data
MJ Rosen, BJ Callahan, DS Fisher, SP Holmes
BMC bioinformatics 13 (1), 1-16, 2012
1072012
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy
MS Ghaemi, DB DiGiulio, K Contrepois, B Callahan, TTM Ngo, ...
Bioinformatics 35 (1), 95-103, 2019
992019
Silva taxonomic training data formatted for DADA2 (Silva version 132)
B Callahan
Zenodo, 2018
872018
Exploring the interplay between topology and secondary structural formation in the protein folding problem
MS Cheung, JM Finke, B Callahan, JN Onuchic
The Journal of Physical Chemistry B 107 (40), 11193-11200, 2003
672003
Correlated evolution of nearby residues in Drosophilid proteins
B Callahan, RA Neher, D Bachtrog, P Andolfatto, BI Shraiman
PLoS genetics 7 (2), e1001315, 2011
522011
Rapid evolution of adaptive niche construction in experimental microbial populations
BJ Callahan, T Fukami, DS Fisher
Evolution 68 (11), 3307-3316, 2014
462014
Pathogen resistance may be the principal evolutionary advantage provided by the microbiome
MR McLaren, BJ Callahan
Philosophical Transactions of the Royal Society B 375 (1808), 20190592, 2020
412020
Emergent gene order in a model of modular polyketide synthases
B Callahan, M Thattai, BI Shraiman
Proceedings of the National Academy of Sciences 106 (46), 19410-19415, 2009
342009
Reproducible research workflow in R for the analysis of personalized human microbiome data
B Callahan, D Proctor, D Relman, J Fukuyama, S Holmes
Biocomputing 2016: Proceedings of the Pacific Symposium, 183-194, 2016
332016
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Articles 1–20