Sven Rahmann
Sven Rahmann
Genome Informatics, University Hospital Essen, University of Duisburg-Essen
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Snakemake—a scalable bioinformatics workflow engine
J Köster, S Rahmann
Bioinformatics 28 (19), 2520-2522, 2012
Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3
M Martin, L Maßhöfer, P Temming, S Rahmann, C Metz, N Bornfeld, ...
Nature genetics 45 (8), 933-936, 2013
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
HMM Logos for visualization of protein families
B Schuster-Böckler, J Schultz, S Rahmann
BMC bioinformatics 5 (1), 7, 2004
Mutational dynamics between primary and relapse neuroblastomas
A Schramm, J Köster, Y Assenov, K Althoff, M Peifer, E Mahlow, ...
Nature genetics 47 (8), 872-877, 2015
Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma
JH Schulte, T Marschall, M Martin, P Rosenstiel, P Mestdagh, S Schlierf, ...
Nucleic acids research 38 (17), 5919-5928, 2010
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
A comprehensive molecular study on Coffin–Siris and Nicolaides–Baraitser syndromes identifies a broad molecular and clinical spectrum converging on altered chromatin remodeling
D Wieczorek, N Bögershausen, F Beleggia, S Steiner-Haldenstätt, E Pohl, ...
Human molecular genetics 22 (25), 5121-5135, 2013
On the power of profiles for transcription factor binding site detection
S Rahmann, T Müller, M Vingron
Statistical applications in genetics and molecular biology 2 (1), 2003
Partitioning biological data with transitivity clustering
T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ...
Nature methods 7 (6), 419-420, 2010
Large scale clustering of protein sequences with FORCE-A layout based heuristic for weighted cluster editing
T Wittkop, J Baumbach, FP Lobo, S Rahmann
BMC bioinformatics 8 (1), 1-12, 2007
Supratentorial ependymomas of childhood carry C11orf95–RELA fusions leading to pathological activation of the NF-κB signaling pathway
T Pietsch, I Wohlers, T Goschzik, V Dreschmann, D Denkhaus, E Dörner, ...
Acta neuropathologica 127 (4), 609-611, 2014
Algorithms for subsequence combinatorics
C Elzinga, S Rahmann, H Wang
Theoretical Computer Science 409 (3), 394-404, 2008
Non-symmetric score matrices and the detection of homologous transmembrane proteins
T Müller, S Rahmann, M Rehmsmeier
Bioinformatics 17 (suppl_1), S182-S189, 2001
N6-adenosine methylation in MiRNAs
T Berulava, S Rahmann, K Rademacher, L Klein-Hitpass, B Horsthemke
PloS one 10 (2), e0118438, 2015
CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks
J Baumbach, K Brinkrolf, LF Czaja, S Rahmann, A Tauch
BMC genomics 7 (1), 1-12, 2006
Exact and heuristic algorithms for weighted cluster editing
S Rahmann, T Wittkop, J Baumbach, M Martin, A Truss, S Böcker
Computational Systems Bioinformatics: (Volume 6), 391-401, 2007
Group testing with DNA chips: generating designs and decoding experiments
A Schliep, DC Torney, S Rahmann
Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE …, 2003
Rapid large-scale oligonucleotide selection for microarrays
S Rahmann
Proceedings. IEEE Computer Society Bioinformatics Conference, 54-63, 2002
Efficient exact motif discovery
T Marschall, S Rahmann
Bioinformatics 25 (12), i356-i364, 2009
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