| Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 66 | 2019 |
| Kinetic modeling of cell metabolism for microbial production RS Costa, A Hartmann, S Vinga Journal of biotechnology 219, 126-141, 2016 | 33 | 2016 |
| Identification of switched ARX models via convex optimization and expectation maximization A Hartmann, JM Lemos, RS Costa, J Xavier, S Vinga Journal of Process Control 28, 9-16, 2015 | 27 | 2015 |
| BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits A Dudnik, AF Almeida, R Andrade, B Avila, P Bañados, D Barbay, ... Phytochemistry reviews 17 (2), 291-326, 2018 | 19 | 2018 |
| An extended dynamic model of Lactococcus lactis metabolism for mannitol and 2, 3-butanediol production RS Costa, A Hartmann, P Gaspar, AR Neves, S Vinga Molecular bioSystems 10 (3), 628-639, 2014 | 18 | 2014 |
| Real-time fractal signal processing in the time domain A Hartmann, P Mukli, Z Nagy, L Kocsis, P Hermán, A Eke Physica A: Statistical Mechanics and its Applications 392 (1), 89-102, 2013 | 16 | 2013 |
| Open community challenge reveals molecular network modules with key roles in diseases S Choobdar, M Ahsen, J Crawford, M Tomasoni, D Lamparter, J Lin, ... | 14 | 2018 |
| Identifying IIR filter coefficients using particle swarm optimization with application to reconstruction of missing cardiovascular signals A Hartmann, JM Lemos, RS Costa, S Vinga Engineering Applications of Artificial Intelligence 34, 193-198, 2014 | 10 | 2014 |
| OptPipe-a pipeline for optimizing metabolic engineering targets A Hartmann, A Vila-Santa, N Kallscheuer, M Vogt, A Julien-Laferrière, ... BMC systems biology 11 (1), 1-9, 2017 | 9 | 2017 |
| Reconstruction of missing cardiovascular signals using adaptive filtering A Hartmann 2010 Computing in Cardiology, 321-324, 2010 | 9 | 2010 |
| RefBool: a reference-based algorithm for discretizing gene expression data S Jung, A Hartmann, A Del Sol Bioinformatics 33 (13), 1953-1962, 2017 | 6 | 2017 |
| SigHotSpotter: scRNA-seq-based computational tool to control cell subpopulation phenotypes for cellular rejuvenation strategies S Ravichandran, A Hartmann, A Del Sol Bioinformatics 36 (6), 1963-1965, 2020 | 5 | 2020 |
| Modeling multiple experiments using regularized optimization: A case study on bacterial glucose utilization dynamics A Hartmann, JM Lemos, S Vinga Computers in biology and medicine 63, 301-309, 2015 | 5 | 2015 |
| SeesawPred: A Web Application for Predicting Cell-fate Determinants in Cell Differentiation A Hartmann, S Okawa, G Zaffaroni, A Del Sol Scientific reports 8 (1), 1-7, 2018 | 4 | 2018 |
| Identification and automatic segmentation of multiphasic cell growth using a linear hybrid model A Hartmann, AR Neves, JM Lemos, S Vinga Mathematical biosciences 279, 83-89, 2016 | 4 | 2016 |
| Online bayesian time-varying parameter estimation of hiv-1 time-series A Hartmann, S Vinga, JM Lemos IFAC Proceedings Volumes 45 (16), 1294-1299, 2012 | 4 | 2012 |
| Exploring the Cellular Objective in Flux Balance Constraint-Based Models RS Costa, S Nguyen, A Hartmann, S Vinga International Conference on Computational Methods in Systems Biology, 211-224, 2014 | 3 | 2014 |
| Hybrid identification of time-varying parameter with particle filtering and expectation maximization A Hartmann, S Vinga, JM Lemos 21st Mediterranean Conference on Control and Automation, 884-889, 2013 | 3 | 2013 |
| Identification of hiv-1 dynamics-estimating the noise model, constant and time-varying parameters of long-term clinical data A Hartmann, S Vinga, JM Lemos International Conference on Bioinformatics Models, Methods and Algorithms 2 …, 2012 | 3 | 2012 |
| Modeling cellular differentiation and reprogramming with gene regulatory networks A Hartmann, S Ravichandran, A Del Sol Computational Stem Cell Biology, 37-51, 2019 | 1 | 2019 |
Susana VingaINESC-ID, Instituto Superior Técnico, Universidade de LisboaVerified email at tecnico.ulisboa.pt
