Single-cell RNA-Seq reveals transcriptional heterogeneity in latent and reactivated HIV-infected cells M Golumbeanu, S Cristinelli, S Rato, M Munoz, M Cavassini, ... Cell reports 23 (4), 942-950, 2018 | 103 | 2018 |
Whole-genome mapping of 5′ RNA ends in bacteria by tagged sequencing: a comprehensive view in Enterococcus faecalis N Innocenti, M Golumbeanu, AF d'Hérouël, C Lacoux, RA Bonnin, ... Rna 21 (5), 1018-1030, 2015 | 51 | 2015 |
Exploring viral infection using single-cell sequencing S Rato, M Golumbeanu, A Telenti, A Ciuffi Virus research 239, 55-68, 2017 | 32 | 2017 |
Proteo-transcriptomic dynamics of cellular response to HIV-1 infection M Golumbeanu, S Desfarges, C Hernandez, M Quadroni, S Rato, ... Scientific reports 9 (1), 213, 2019 | 30 | 2019 |
Emulator-based Bayesian optimization for efficient multi-objective calibration of an individual-based model of malaria T Reiker, M Golumbeanu, A Shattock, L Burgert, TA Smith, S Filippi, ... Nature communications 12 (1), 7212, 2021 | 25 | 2021 |
The influence of biological, epidemiological, and treatment factors on the establishment and spread of drug-resistant Plasmodium falciparum T Masserey, T Lee, M Golumbeanu, AJ Shattock, SL Kelly, IM Hastings, ... Elife 11, e77634, 2022 | 16 | 2022 |
BMix: probabilistic modeling of occurring substitutions in PAR-CLIP data M Golumbeanu, P Mohammadi, N Beerenwinkel Bioinformatics 32 (7), 976-983, 2016 | 13 | 2016 |
Bioinformatics and HIV latency A Ciuffi, P Mohammadi, M Golumbeanu, J di Iulio, A Telenti Current HIV/Aids Reports 12, 97-106, 2015 | 13 | 2015 |
Leveraging mathematical models of disease dynamics and machine learning to improve development of novel malaria interventions M Golumbeanu, GJ Yang, F Camponovo, EM Stuckey, N Hamon, ... Infectious Diseases of Poverty 11 (03), 37-53, 2022 | 10 | 2022 |
The use of routine health facility data for micro-stratification of malaria risk in mainland Tanzania SG Thawer, M Golumbeanu, K Munisi, S Aaron, F Chacky, S Lazaro, ... Malaria Journal 21 (1), 345, 2022 | 9 | 2022 |
Model-informed target product profiles of long-acting-injectables for use as seasonal malaria prevention L Burgert, T Reiker, M Golumbeanu, JJ Möhrle, MA Penny PLOS Global Public Health 2 (3), e0000211, 2022 | 7 | 2022 |
Combining machine learning and mathematical models of disease dynamics to guide development of novel disease interventions M Golumbeanu, G Yang, F Camponovo, EM Stuckey, N Hamon, M Mondy, ... medRxiv, 2021.01. 05.21249283, 2021 | 6 | 2021 |
TMixClust: time series clustering of gene expression with gaussian mixed-effects models and smoothing splines M Golumbeanu, N Beerenwinkel R package version 1 (0), 2020 | 6 | 2020 |
Machine learning approaches to calibrate individual-based infectious disease models T Reiker, M Golumbeanu, A Shattock, L Burgert, TA Smith, S Filippi, ... medRxiv, 2021.01. 27.21250484, 2021 | 4 | 2021 |
Clustering time series gene expression data with TMixClust M Golumbeanu, N Beerenwinkel | 4 | 2018 |
Spatio-temporal modelling of routine health facility data for malaria risk micro-stratification in mainland Tanzania SG Thawer, M Golumbeanu, S Lazaro, F Chacky, K Munisi, S Aaron, ... Scientific Reports 13 (1), 10600, 2023 | 3 | 2023 |
AnophelesModel: An R package to interface mosquito bionomics, human exposure and intervention effects with models of malaria intervention impact M Golumbeanu, O Briët, C Champagne, J Lemant, M Winkel, B Zogo, ... bioRxiv, 2023.10. 17.562838, 2023 | 1 | 2023 |
Applying hidden markov models to rna-seq data M Golumbeanu KTH Royal Institute of Technology, 2013 | 1 | 2013 |
Bridging the Gap from Molecular Surveillance to Programmatic Decisions for Malaria Control and Elimination. M Golumbeanu, CAV Edi, MW Hetzel, C Koepfli, C Nsanzabana The American Journal of Tropical Medicine and Hygiene, tpmd220749-tpmd220749, 2023 | | 2023 |
Comparison of different genotyping techniques to distinguish recrudescence from new infection in studies assessing the efficacy of antimalarial drugs against Plasmodium falciparum A Schnoz, C Beuret, M Concu, S Hosch, LK Rutaihwa, M Golumbeanu, ... bioRxiv, 2023.04. 24.538072, 2023 | | 2023 |