Andy Perkins
Andy Perkins
Professor of Computer Science and Engineering, Mississippi State University
Verified email at - Homepage
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Clustering of high throughput gene expression data
H Pirim, B Ekşioğlu, AD Perkins, Ç Yüceer
Computers & operations research 39 (12), 3046-3061, 2012
Extracting gene networks for low-dose radiation using graph theoretical algorithms
BH Voy, JA Scharff, AD Perkins, AM Saxton, B Borate, EJ Chesler, ...
PLoS computational biology 2 (7), e89, 2006
Dynamics of microRNAs in bull spermatozoa
A Govindaraju, A Uzun, LS Robertson, MO Atli, A Kaya, E Topper, ...
Reproductive Biology and Endocrinology 10, 1-10, 2012
Threshold selection in gene co-expression networks using spectral graph theory techniques
AD Perkins, MA Langston
BMC bioinformatics 10, 1-11, 2009
Genome‐Wide Association Mapping of Aspergillus flavus and Aflatoxin Accumulation Resistance in Maize
ML Warburton, JD Tang, GL Windham, LK Hawkins, SC Murray, W Xu, ...
Crop Science 55 (5), 1857-1867, 2015
Genome‐level analysis of genetic regulation of liver gene expression networks
D Gatti, A Maki, EJ Chesler, R Kirova, O Kosyk, L Lu, KF Manly, ...
Hepatology 46 (2), 548-557, 2007
A systematic comparison of genome-scale clustering algorithms
JJ Jay, JD Eblen, Y Zhang, M Benson, AD Perkins, AM Saxton, BH Voy, ...
BMC bioinformatics 13, 1-12, 2012
Molecular physiognomies and applications of adipose-derived stem cells
F Uzbas, ID May, AM Parisi, SK Thompson, A Kaya, AD Perkins, E Memili
Stem Cell Reviews and Reports 11, 298-308, 2015
Using genome-wide associations to identify metabolic pathways involved in maize aflatoxin accumulation resistance
JD Tang, A Perkins, WP Williams, ML Warburton
BMC genomics 16, 1-12, 2015
Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally
HC Tekedar, S Kumru, J Blom, AD Perkins, MJ Griffin, H Abdelhamed, ...
PloS one 14 (8), e0221018, 2019
A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation
R Mobini, BA Andersson, J Erjefält, M Hahn-Zoric, MA Langston, ...
BMC systems biology 3, 1-11, 2009
Gene expression analysis of copper tolerance and wood decay in the brown rot fungus Fibroporia radiculosa
JD Tang, LA Parker, AD Perkins, TS Sonstegard, SG Schroeder, ...
Applied and environmental microbiology 79 (5), 1523-1533, 2013
Acetylation and methylation of sperm histone 3 lysine 27 (H3K27ac and H3K27me3) are associated with bull fertility
NA Kutchy, ESB Menezes, A Chiappetta, W Tan, RW Wills, A Kaya, ...
Andrologia 50 (3), e12915, 2018
Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa
JD Tang, AD Perkins, TS Sonstegard, SG Schroeder, SC Burgess, ...
Applied and environmental microbiology 78 (7), 2272-2281, 2012
Innovative computational methods for transcriptomic data analysis: A case study in the use of FPT for practical algorithm design and implementation
MA Langston, AD Perkins, AM Saxton, JA Scharff, BH Voy
The Computer Journal 51 (1), 26-38, 2008
Whole blood transcriptomic analysis of beef cattle at arrival identifies potential predictive molecules and mechanisms that indicate animals that naturally resist bovine …
MA Scott, AR Woolums, CE Swiderski, AD Perkins, B Nanduri, DR Smith, ...
PLoS One 15 (1), e0227507, 2020
Gender differences in inflammatory proteins and pathways in seasonal allergic rhinitis
F Barrenäs, B Andersson, LO Cardell, M Langston, R Mobini, A Perkins, ...
Cytokine 42 (3), 325-329, 2008
Relating significance and relations of differentially expressed genes in response to Aspergillus flavus infection in maize
MC Asters, WP Williams, AD Perkins, JE Mylroie, GL Windham, X Shan
Scientific Reports 4 (1), 4815, 2014
Toward a more holistic method of genome assembly assessment
A Thrash, F Hoffmann, A Perkins
BMC bioinformatics 21 (Suppl 4), 249, 2020
Effects of florfenicol feeding on diversity and composition of the intestinal microbiota of channel catfish (Ictalurus punctatus)
H Abdelhamed, O Ozdemir, G Waldbieser, AD Perkins, ML Lawrence, ...
Aquaculture research 50 (12), 3663-3672, 2019
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