Lars Juhl Jensen
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STRING v10: protein–protein interaction networks, integrated over the tree of life
D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ...
Nucleic acids research 43 (D1), D447-D452, 2015
65322015
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research, gkw937, 2016
37162016
STRING v9. 1: protein-protein interaction networks, with increased coverage and integration
A Franceschini, D Szklarczyk, S Frankild, M Kuhn, M Simonovic, A Roth, ...
Nucleic acids research 41 (D1), D808-D815, 2012
36172012
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
D Szklarczyk, A Franceschini, M Kuhn, M Simonovic, A Roth, P Minguez, ...
Nucleic acids research 39 (suppl_1), D561-D568, 2010
31582010
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ...
Nucleic acids research 47 (D1), D607-D613, 2019
28572019
Proteome survey reveals modularity of the yeast cell machinery
AC Gavin, P Aloy, P Grandi, R Krause, M Boesche, M Marzioch, C Rau, ...
Nature 440 (7084), 631-636, 2006
28222006
STRING 8—a global view on proteins and their functional interactions in 630 organisms
LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ...
Nucleic acids research 37 (suppl_1), D412-D416, 2009
23442009
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
JV Olsen, M Vermeulen, A Santamaria, C Kumar, ML Miller, LJ Jensen, ...
Science signaling 3 (104), ra3-ra3, 2010
13562010
STRING: known and predicted protein–protein associations, integrated and transferred across organisms
C Von Mering, LJ Jensen, B Snel, SD Hooper, M Krupp, M Foglierini, ...
Nucleic acids research 33 (suppl_1), D433-D437, 2005
13152005
Protein disorder prediction: implications for structural proteomics
R Linding, LJ Jensen, F Diella, P Bork, TJ Gibson, RB Russell
Structure 11 (11), 1453-1459, 2003
12932003
Mining electronic health records: towards better research applications and clinical care
PB Jensen, LJ Jensen, S Brunak
Nature Reviews Genetics 13 (6), 395-405, 2012
12512012
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ...
Nucleic acids research 44 (D1), D286-D293, 2016
11932016
Drug target identification using side-effect similarity
M Campillos, M Kuhn, AC Gavin, LJ Jensen, P Bork
Science 321 (5886), 263-266, 2008
11872008
Feature-based prediction of non-classical and leaderless protein secretion
JD Bendtsen, LJ Jensen, N Blom, G Von Heijne, S Brunak
Protein Engineering Design and Selection 17 (4), 349-356, 2004
10832004
A side effect resource to capture phenotypic effects of drugs
M Kuhn, M Campillos, I Letunic, LJ Jensen, P Bork
Molecular systems biology 6 (1), 343, 2010
8252010
Systematic discovery of in vivo phosphorylation networks
R Linding, LJ Jensen, GJ Ostheimer, MATM van Vugt, C Jørgensen, ...
Cell 129 (7), 1415-1426, 2007
7602007
Literature mining for the biologist: from information retrieval to biological discovery
LJ Jensen, J Saric, P Bork
Nature reviews genetics 7 (2), 119-129, 2006
7452006
STRING 7—recent developments in the integration and prediction of protein interactions
C Von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, ...
Nucleic acids research 35 (suppl_1), D358-D362, 2007
7212007
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper
J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ...
Molecular biology and evolution 34 (8), 2115-2122, 2017
6742017
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
L Orlando, A Ginolhac, G Zhang, D Froese, A Albrechtsen, M Stiller, ...
Nature 499 (7456), 74-78, 2013
6622013
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