Vincent Denef
Vincent Denef
Ecology and Evolutionary Biology, University of Michigan
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Zitiert von
Zitiert von
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
PSG Chain, VJ Denef, KT Konstantinidis, LM Vergez, L Agulló, VL Reyes, ...
Proceedings of the National Academy of Sciences 103 (42), 15280-15287, 2006
Functional analysis of natural microbial consortia using community proteomics
NC VerBerkmoes, VJ Denef, RL Hettich, JF Banfield
Nature Reviews Microbiology 7 (3), 196-205, 2009
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
I Lo, VJ Denef, NC VerBerkmoes, MB Shah, D Goltsman, G DiBartolo, ...
Nature 446 (7135), 537-541, 2007
Strain-resolved community genomic analysis of gut microbial colonization in a premature infant
MJ Morowitz, VJ Denef, EK Costello, BC Thomas, V Poroyko, DA Relman, ...
Proceedings of the National Academy of Sciences 108 (3), 1128-1133, 2011
AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature
VJ Denef, RS Mueller, JF Banfield
The ISME journal 4 (5), 599-610, 2010
Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing “Leptospirillum rubarum”(Group II) and “Leptospirillum ferrodiazotrophum”(Group III) bacteria in …
DSA Goltsman, VJ Denef, SW Singer, NC VerBerkmoes, M Lefsrud, ...
Applied and environmental microbiology 75 (13), 4599-4615, 2009
Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities
VJ Denef, LH Kalnejais, RS Mueller, P Wilmes, BJ Baker, BC Thomas, ...
Proceedings of the National Academy of Sciences 107 (6), 2383-2390, 2010
Biphenyl and Benzoate Metabolism in a Genomic Context: Outlining Genome-Wide Metabolic Networks in Burkholderia xenovorans LB400
VJ Denef, J Park, TV Tsoi, JM Rouillard, H Zhang, JA Wibbenmeyer, ...
Applied and Environmental Microbiology 70 (8), 4961-4970, 2004
Persisting viral sequences shape microbial CRISPR-based immunity
AD Weinberger, CL Sun, MM Pluciński, VJ Denef, BC Thomas, P Horvath, ...
PLoS computational biology 8 (4), e1002475, 2012
Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation
SL Simmons, G DiBartolo, VJ Denef, DSA Goltsman, MP Thelen, ...
PLoS biology 6 (7), e177, 2008
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ...
Nucleic acids research 45 (D1), gkw1030, 2016
Cyanobacterial harmful algal blooms are a biological disturbance to Western Lake Erie bacterial communities
MA Berry, TW Davis, RM Cory, MB Duhaime, TH Johengen, GW Kling, ...
Environmental microbiology 19 (3), 1149-1162, 2017
Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities
VJ Denef, J Park, JLM Rodrigues, TV Tsoi, SA Hashsham, JM Tiedje
Environmental Microbiology 5 (10), 933-943, 2003
The dynamic genetic repertoire of microbial communities
P Wilmes, SL Simmons, VJ Denef, JF Banfield
FEMS microbiology reviews 33 (1), 109-132, 2008
Growth Substrate- and Phase-Specific Expression of Biphenyl, Benzoate, and C1 Metabolic Pathways in Burkholderia xenovorans LB400
VJ Denef, MA Patrauchan, C Florizone, J Park, TV Tsoi, W Verstraete, ...
Journal of bacteriology 187 (23), 7996-8005, 2005
Genetic and Genomic Insights into the Role of Benzoate-Catabolic Pathway Redundancy in Burkholderia xenovorans LB400
VJ Denef, JA Klappenbach, MA Patrauchan, C Florizone, JLM Rodrigues, ...
Applied and Environmental Microbiology 72 (1), 585-595, 2006
In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids
VJ Denef, JF Banfield
Science 336 (6080), 462-466, 2012
Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea
AP Yelton, LR Comolli, NB Justice, C Castelle, VJ Denef, BC Thomas, ...
BMC genomics 14 (1), 1-15, 2013
Ecological distribution and population physiology defined by proteomics in a natural microbial community
RS Mueller, VJ Denef, LH Kalnejais, KB Suttle, BC Thomas, P Wilmes, ...
Molecular systems biology 6 (1), 374, 2010
Giant virus diversity and host interactions through global metagenomics
F Schulz, S Roux, D Paez-Espino, S Jungbluth, DA Walsh, VJ Denef, ...
Nature 578 (7795), 432-436, 2020
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